Publications

Prof. Paul W. O’Toole

Paul O'Toole

  1. Borrel G, O’Toole PW, Harris HM, Peyret P, Brugère JF, Gribaldo S. Phylogenomic data support a seventh order of methylotrophic methanogens and provide insights into the evolution of methanogenesis. Genome Biol Evol. 2013 Aug 28. [Epub ahead of print] PMID: 23985970.
  2. Neville BA, Sheridan PO, Harris HM, Coughlan S, Flint HJ, Duncan SH, Jeffery IB, Claesson MJ, Ross RP, Scott KP, O’Toole PW. Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans. PLoS One. 2013 Jul 23;8(7):e68919. doi: 10.1371/journal.pone.0068919. Print 2013. PMID: 23935906.
  3. Borrel G, Harris HM, Parisot N, Gaci N, Tottey W, Mihajlovski A, Deane J, Gribaldo S, Bardot O, Peyretaillade E, Peyret P, O’Toole PW, Brugère JF. Genome Sequence of “Candidatus Methanomassiliicoccus intestinalis” Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces. Genome Announc. 2013 Jul 11;1(4). doi:pii: e00453-13. 10.1128/genomeA.00453-13. PubMed PMID: 23846268; PubMed Central PMCID: PMC3709145.
  4. Tottey W, Denonfoux J, Jaziri F, Parisot N, Missaoui M, Hill D, Borrel G, Peyretaillade E, Alric M, Harris HM, Jeffery IB, Claesson MJ, O’Toole PW, Peyret P, Brugère JF. The human gut chip “HuGChip”, an explorative phylogenetic microarray for determining gut microbiome diversity at family level. PLoS One. 2013 May 17;8(5):e62544. doi: 10.1371/journal.pone.0062544. Print 2013. PubMed PMID: 23690942; PubMed Central PMCID: PMC3656878.
  5. Jeffery IB, O’Toole PW. Diet-Microbiota Interactions and Their Implications for Healthy Living. Nutrients. 2013; 5(1):234-252. doi: 10.3390/nu5010234. Review. PMID: 23344252.
  6. Lakshminarayanan B, Harris HM, Coakley M, O’Sullivan O, Stanton C, Pruteanu M, Shanahan F, O’Toole PW, Ross PR. Prevalence and characterisation of Clostridium perfringens from the faecal microbiota of elderly Irish subjects. J Med Microbiol. 2013Mar 62(3): 457-466. doi: 10.1099/jmm.0.052258-0. PMID: 23222860.
  7. O’Sullivan O, Coakley M, Lakshminarayanan B, Conde S, Claesson MJ, Cusack S, Fitzgerald AP, O’Toole PW, Stanton C, Ross RP; on behalf of the ELDERMET Consortium. Alterations in intestinal microbiota of elderly Irish subjects post-antibiotic therapy. J Antimicrob Chemother. 2013 Jan;68(1):214-21. doi: 10.1093/jac/dks348 PMID: 22949626.
  8. Lakshminarayanan B, Guinane CM, O’Connor PM, Coakley M, Hill C, Stanton C, O’Toole PW, Ross RP. Isolation and characterization of bacteriocin-producing bacteria from the intestinal microbiota of elderly Irish subjects. J Appl Microbiol. 2012 Nov 26. doi: 10.1111/jam.12085. [Epub ahead of print] PMID:23181509.
  9. Cusack S, O’Toole PW. Challenges and Implications for Biomedical Research and Intervention Studies in Older Populations: Insights from the ELDERMET Study. Gerontology. 2012 Nov 6. [Epub ahead of print] PMID: 23146954.
  10. Claesson MJ, Jeffery IB, Conde S, Power SE, O’Connor EM, Cusack S, Harris HM, Coakley M, Lakshminarayanan B, O’Sullivan O, Fitzgerald GF, Deane J, O’Connor M, Harnedy N, O’Connor K, O’Mahony D, van Sinderen D, Wallace M, Brennan L, Stanton C, Marchesi JR, Fitzgerald AP, Shanahan F, Hill C, Ross RP, O’Toole PW. Gut microbiota composition correlates with diet and health in the elderly. Nature. 2012 Aug 9;488(7410):178-84. doi: 10.1038/nature11319.

Dr. Denis O’Mahony

Denis O'Mahony

  1. da Mata C, Allen PF, Cronin M, O’Mahony D, McKenna G, Woods N. Cost-effectiveness of ART restorations in elderly adults: a randomized clinical trial. Community Dent Oral Epidemiol. 2013 Aug 19. doi: 10.1111/cdoe.12066. [Epub ahead of print] PMID: 23952107.
  2. Parsons C, McCorry N, Murphy K, Byrne S, O’Sullivan D, O’Mahony D, Passmore P, Patterson S, Hughes C. Assessment of factors that influence physician decision making regarding medication use in patients with dementia at the end of life. Int J Geriatr Psychiatry. 2013 Jul 9. doi: 10.1002/gps.4006. [Epub ahead of print] PubMed PMID: 23836439.
  3. Ryan C, O’Mahony D, Kennedy J, Weedle P, Cottrell E, Heffernan M, O’Mahony B, Byrne S. Potentially inappropriate prescribing in older residents in Irish nursing homes. Age Ageing. 2013 Jan;42(1):116-20. doi: 10.1093/ageing/afs068. Epub 2012 Jul 24. PMID: 22832380.
  4. O’Sullivan DP, O’Mahony D, Parsons C, Hughes C, Murphy K, Patterson S, Byrne S. A Prevalence Study of Potentially Inappropriate Prescribing in Irish Long-Term Care Residents. Drugs Aging. 2012 Dec 11. [Epub ahead of print] PMID: 23229766.
  5. Ryan C, O’Mahony D, O’Donovan DO, O’Grady E, Weedle P, Kennedy J, Byrne S. A comparison of the application of STOPP/START to patients’ drug lists with and without clinical information. Int J Clin Pharm. 2012 Dec 9. [Epub ahead of print]PMID:23225094.
  6. O’Connor MN, Gallagher P, O’Mahony D. Inappropriate prescribing: criteria, detection and prevention. Drugs Aging. 2012 Jun 1;29(6):437-52. doi: 10.2165/11632610-000000000-00000.
  7. O’Mahony D, Cherubini A, Petrovic M. Optimizing pharmacotherapy in older patients: a European perspective. Drugs Aging. 2012 Jun 1;29(6): 423-5. doi: 10.2165/11630990-000000000-00000. No abstract available.
  8. O’Connor MN, Gallagher P, Byrne S, O’Mahony D. Adverse drug reactions in older patients during hospitalisation: are they predictable? Age Ageing. 2012 Mar 28. [Epub ahead of print].
  9. McKenna G, Allen PF, Woods N, O’Mahony D, Damata C, Cronin M, Normand C. A preliminary report of the cost-effectiveness of tooth replacement strategies for partially dentate elders. Gerodontology. 2012 Mar 8. doi: 10.1111/j.1741-2358.2012.00665.x. [Epub ahead of print]
  10. McKenna G, Allen PF, Flynn A, O’Mahony D, Damata C, Cronin M, Woods N. Impact of tooth replacement strategies on the nutritional status of partially-dentate elders. Gerodontology. 2011 Nov 28. doi: 10.1111/j.1741-2358.2011.00579.x. [Epub ahead of print]

Professor R. Paul Ross

Paul Ross

  1. O’Connell KJ, O’Connell Motherway M, O’Callaghan J, Fitzgerald GF, Ross RP, Ventura M, Stanton C, van Sinderen D. Metabolism of four α-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003. Appl Environ Microbiol. 2013 Aug 2. [Epub ahead of print] PMID: 23913435.
  2. Clarke SF, Murphy EF, O’Sullivan O, Ross RP, O’Toole PW, Shanahan F, Cotter PD. Targeting the microbiota to address diet-induced obesity: a time dependent challenge. PLoS One. 2013 Jun 7;8(6):e65790. doi: 10.1371/journal.pone.0065790. Print 2013. PubMed PMID: 23762426; PubMed Central PMCID: PMC3676335.
  3. O’Donnell MM, O’Toole PW, Ross RP. Catabolic flexibility of mammalian-associated lactobacilli. Microb Cell Fact. 2013 May 16;12:48. doi:10.1186/1475-2859-12-48. PubMed PMID: 23680304; PubMed Central PMCID: PMC3668208.
  4. Lakshminarayanan B, Harris HM, Coakley M, O’Sullivan O, Stanton C, Pruteanu M, Shanahan F, O’Toole PW, Ross PR. Prevalence and characterisation of Clostridium perfringens from the faecal microbiota of elderly Irish subjects. J Med Microbiol. 2013Mar 62(3): 457-466. doi: 10.1099/jmm.0.052258-0. PMID: 23222860.
  5. O’Sullivan O, Coakley M, Lakshminarayanan B, Conde S, Claesson MJ, Cusack S, Fitzgerald AP, O’Toole PW, Stanton C, Ross PR; on behalf of the ELDERMET Consortium. Alterations in intestinal microbiota of elderly Irish subjects post-antibiotic therapy. J Antimicrob Chemother. 2013 Jan;68(1):214-21. doi: 10.1093/jac/dks348 PMID: 22949626.
  6. Cotter PD, Ross RP, Hill C. Bacteriocins – a viable alternative to antibiotics? Nat Rev Microbiol. 2012 Dec 24. doi: 10.1038/nrmicro2937. [Epub ahead of print]PMID:23268227.
  7. Molloy EM, Ross RP, Hill C. ‘Bac’ to the future: bioengineering lantibiotics for designer purposes. Biochem Soc Trans. 2012 Dec 1;40(6):1492-7. doi: 10.1042/BST20120193. PMID:23176504 [PubMed - in process]
  8. Buzoianu SG, Walsh MC, Rea MC, Cassidy JP, Ross RP, Gardiner GE, Lawlor PG. Effect of feeding genetically modified Bt MON810 maize to ∼40-day-old pigs for 110 days on growth and health indicators. Animal. 2012 Oct;6(10):1609-19. doi: 10.1017/S1751731112000249.PMID:23031560. [PubMed - in process]
  9. Mills S, Shanahan F, Stanton C, Hill C, Coffey A, Ross RP. Movers and shakers: Influence of bacteriophages in shaping the mammalian gut microbiota. Gut Microbes. 2012 Sep 28;4(1). [Epub ahead of print]PMID:23022738.
  10. Murphy EF, Clarke SF, Marques TM, Hill C, Stanton C, Ross RP, O’Doherty RM, Shanahan F, Cotter PD. Antimicrobials: Strategies for targeting obesity and metabolic health? Gut Microbes. 2012 Sep 27;4(1). [Epub ahead of print] PMID: 23018760.

Dr. Catherine Stanton

Catherine Stanton

  1. Power SE, O’Toole PW, Stanton C, Ross RP, Fitzgerald GF. Intestinal microbiota, diet and health. Br J Nutr. 2013 Aug 12:1-16. [Epub ahead of print] PMID: 23931069.
  2. Murphy EF, Cotter PD, Hogan A, O’Sullivan O, Joyce A, Fouhy F, Clarke SF, Marques TM, O’Toole PW, Stanton C, Quigley EM, Daly C, Ross PR, O’Doherty RM, Shanahan F. Divergent metabolic outcomes arising from targeted manipulation of the gut microbiota in diet-induced obesity. Gut. 2013 Feb;62(2):220-6. doi:10.1136/gutjnl-2011-300705. Epub 2012 Feb 16. Erratum in: Gut. 2013 Feb;62(2):226. PubMed PMID: 22345653.
  3. Murphy EF, Clarke SF, Marques TM, Hill C, Stanton C, Ross RP, O’Doherty RM, Shanahan F, Cotter PD. Antimicrobials: Strategies for targeting obesity and metabolic health? Gut Microbes. 2013 Jan-Feb;4(1):48-53. doi: 10.4161/gmic.22328. Epub 2012 Sep 27. Review. PubMed PMID: 23018760; PubMed Central PMCID: PMC3555886.
  4. Guinane CM, Tadrous A, Fouhy F, Ryan CA, Dempsey EM, Murphy B, Andrews E, Cotter PD, Stanton C, Ross RP. Microbial composition of human appendices from patients following appendectomy. MBio. 2013 Jan 15;4(1). pii: e00366-12. doi: 10.1128/mBio.00366-12. PMID: 23322636.
  5. Barrett E, Fitzgerald P, Dinan TG, Cryan JF, Ross RP, Quigley EM, Shanahan F, Kiely B, Fitzgerald GF, O’Toole PW, Stanton C. Bifidobacterium breve with α-Linolenic Acid and Linoleic Acid Alters Fatty Acid Metabolism in the Maternal Separation Model of Irritable Bowel Syndrome. PLoS One. 2012;7(11):e48159. doi: 10.1371/journal.pone.0048159. Epub 2012 Nov 20. PMID:23185248[PubMed - in process].
  6. Fouhy F, Guinane CM, Hussey S, Wall R, Ryan CA, Dempsey EM, Murphy B, Ross RP, Fitzgerald GF, Stanton C., Cotter PD. High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin. Antimicrob Agents Chemother. 2012 Nov;56(11):5811-20. doi: 10.1128/AAC.00789-12. Epub 2012 Sep 4. PMID: 22948872[PubMed - in process].
  7. Doherty SB, Auty MA, Stanton C., Ross RP, Fitzgerald GF, Brodkorb A. Application of whey protein micro-bead coatings for enhanced strength and probiotic protection during fruit juice storage and gastric incubation. J Microencapsul. 2012;29(8):713-28. doi: 10.3109/02652048.2011.638994. Epub 2012 Sep 12. PMID:22970750[PubMed - in process].
  8. O’ Shea EF, O’ Connor PM, Raftis EJ, O’ Toole PW, Stanton C., Cotter PD, Ross RP, Hill C. Subspecies diversity in bacteriocin production by intestinal Lactobacillus salivarius strains. Gut Microbes. 2012 Sep-Oct;3(5):468-73. Epub 2012 Aug 15. PMID: 22892690.
  9. Barrett E, Ross RP, O’Toole PW, Fitzgerald GF, Stanton C. γ-Aminobutyric acid production by culturable bacteria from the human intestine. J Appl Microbiol. 2012 Aug;113(2):411-7. doi: 10.1111/j.1365-2672.2012.05344.x. Epub 2012 Jun 15. PMID: 22612585.
  10. Wall R, Marques TM, O’Sullivan O, Ross RP, Shanahan F, Quigley EM, Dinan TG, Kiely B, Fitzgerald GF, Cotter PD, Fouhy F, Stanton C.. Contrasting effects of Bifidobacterium breve NCIMB 702258 and Bifidobacterium breve DPC 6330 on the composition of murine brain fatty acids and gut microbiota. Am J Clin Nutr. 2012 May;95(5):1278-87. Epub 2012 Apr 4.

Professor Gerald Fitzgerald

Gerald Fitzgerald

  1. Quigley L, McCarthy R, O’Sullivan O, Beresford TP, Fitzgerald GF, Ross RP, Stanton C, Cotter PD. The microbial content of raw and pasteurized cow milk as determined by molecular approaches. J Dairy Sci. 2013 Aug;96(8):4928-37. doi: 10.3168/jds.2013-6688. Epub 2013 Jun 5. PMID: 23746589.
  2. Ross RP, Fitzgerald GF, Stanton C. Unraveling the digestion of milk protein. Am J Clin Nutr. 2013 Jun;97(6):1161-2. doi: 10.3945/ajcn.113.063321. Epub 2013 May 8. PubMed PMID: 23656901.
  3. O’Connell Motherway M, Kinsella M, Fitzgerald GF, van Sinderen D. Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003. Microb Biotechnol. 2013 Jan;6(1):67-79. doi: 10.1111/1751-7915.12011. Epub 2012 Dec 2. PMID: 23199239[PubMed - in process].
  4. Barrett E, Fitzgerald P, Dinan TG, Cryan JF, Ross RP, Quigley EM, Shanahan F, Kiely B, Fitzgerald GF, O’Toole PW, Stanton C. Bifidobacterium breve with α-Linolenic Acid and Linoleic Acid Alters Fatty Acid Metabolism in the Maternal Separation Model of Irritable Bowel Syndrome. PLoS One. 2012;7(11):e48159. doi: 10.1371/journal.pone.0048159. Epub 2012 Nov 20. PMID:23185248[PubMed - in process].
  5. Bottacini F, Milani C, Turroni F, Sánchez B, Foroni E, Duranti S, Serafini F, Viappiani A, Strati F, Ferrarini A, Delledonne M, Henrissat B, Coutinho P, Fitzgerald GF , Margolles A, van Sinderen D, Ventura M. Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One. 2012;7(9):e44229. doi: 10.1371/journal.pone.0044229. Epub 2012 Sep 20. PMID: 23028506[PubMed - in process].
  6. Doherty SB, Auty MA, Stanton C., Ross RP, Fitzgerald GF, Brodkorb A. Application of whey protein micro-bead coatings for enhanced strength and probiotic protection during fruit juice storage and gastric incubation. J Microencapsul. 2012;29(8):713-28. doi: 10.3109/02652048.2011.638994. Epub 2012 Sep 12. PMID:22970750[PubMed - in process].
  7. Quigley L, O’Sullivan O, Beresford TP, Ross RP, Fitzgerald GF, Cotter PD. High-throughput sequencing detects subpopulations of bacteria not previously associated with artisanal cheeses. Appl Environ Microbiol. 2012 Jun 8. [Epub ahead of print].
  8. Kent RM, Guinane CM, O’Connor PM, Fitzgerald GF, Hill C, Stanton C, Paul Ross R. Production of the antimicrobial peptides Caseicin A and B by Bacillus isolates growing on sodium caseinate. Lett Appl Microbiol. 2012 May 29. doi: 10.1111/j.1472-765X.2012.03271.x. [Epub ahead of print].
  9. Alvarez-Martin P, Fernández M, O’Connell-Motherway M, O’Connell KJ, Sauvageot N, Fitzgerald GF, Macsharry J, Zomer A, van Sinderen D. A conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003. Appl Environ Microbiol. 2012 May 25. [Epub ahead of print].
  10. Fouhy F, Ross RP, Fitzgerald GF, Stanton C, Cotter PD. Composition of the early intestinal microbiota: Knowledge, knowledge gaps and the use of high-throughput sequencing to address these gaps. Gut Microbes. 2012 May 1;3(3). [Epub ahead of print].

Professor Fergus Shanahan

Fergus Shanahan

  1. Kennedy PJ, Clarke G, O’Neill A, Groeger JA, Quigley EM, Shanahan F, Cryan JF, Dinan TG. Cognitive performance in irritable bowel syndrome: evidence of a stress-related impairment in visuospatial memory. Psychol Med. 2013 Aug 29:1-14. [Epub ahead of print] PMID: 23985155.
  2. Groeger D, O’Mahony L, Murphy EF, Bourke JF, Dinan TG, Kiely B, Shanahan F, Quigley EM. Bifidobacterium infantis 35624 modulates host inflammatory processes beyond the gut. Gut Microbes. 2013 Jun 21;4(4). [Epub ahead of print] PubMed PMID: 23842110.
  3. Rajilić-Stojanović M, Shanahan F, Guarner F, de Vos WM. Phylogenetic analysis of dysbiosis in ulcerative colitis during remission. Inflamm Bowel Dis. 2013 Mar;19(3):481-8. doi: 10.1097/MIB.0b013e31827fec6d. PubMed PMID: 23385241.
  4. Shanahan F. The colonic microbiota in health and disease. Curr Opin Gastroenterol. 2013 Jan;29(1):49-54. doi: 10.1097/MOG.0b013e32835a3493. PMID:23041677[PubMed - in process].
  5. Jin S, Chin J, Seeber S, Niewoehner J, Weiser B, Beaucamp N, Woods J, Murphy C, Fanning A, Shanahan F, Nally K, Kajekar R, Salas A, Planell N, Lozano J, Panes J, Parmar H, Demartino J, Narula S, Thomas-Karyat DA. TL1A/TNFSF15 directly induces proinflammatory cytokines, including TNFα, from CD3+CD161+ T cells to exacerbate gut inflammation. Mucosal Immunol. 2012 Dec 19. doi: 10.1038/mi.2012.124. [Epub ahead of print] PMID:23250276.
  6. Shanahan F. A commentary on the safety of probiotics. Gastroenterol Clin North Am. 2012 Dec;41(4):869-76. doi: 10.1016/j.gtc.2012.08.006. PMID: 23101692[PubMed - in process].
  7. Shanahan F, Dinan TG, Ross P, Hill C. Probiotics in transition. Clin Gastroenterol Hepatol. 2012 Nov;10(11):1220-4. doi: 10.1016/j.cgh.2012.09.020. Epub 2012 Sep 23. PMID: 23010563[PubMed - in process].
  8. Mc Williams SR, Mc Laughlin PD, O’Connor OJ, Desmond AN, Ní Laoíre A,Shanahan F, Quigley EM, Maher MM. Computed tomography assessment of intestinal gas volumes in functional gastrointestinal disorders. J Neurogastroenterol Motil. 2012 Oct;18(4):419-25. doi: 10.5056/jnm.2012.18.4.419. Epub 2012 Oct 9. PMID: 23106003.
  9. Jeffery IB, Claesson MJ, O’Toole PW, Shanahan F. Categorization of the gut microbiota: enterotypes or gradients? Nat Rev Microbiol. 2012 Sep;10(9):591-2. No abstract available. PMID: 23066529.
  10. Macsharry J, O’Mahony C, Shalaby KH, Sheil B, Karmouty-Quintana H, Shanahan F, Martin JG. Immunomodulatory effects of feeding with Bifidobacterium longum on allergen-induced lung inflammation in the mouse. Pulm Pharmacol Ther. 2012 Jun 13. [Epub ahead of print].

Professor Ted Dinan

Ted Dinan

  1. Dinan TG, Cryan JF. Melancholic microbes: a link between gut microbiota and depression? Neurogastroenterol Motil. 2013 Sep;25(9):713-9. doi: 10.1111/nmo.12198. PMID: 23910373.
  2. Dinan TG, Stanton C, Cryan JF. Psychobiotics: A Novel Class of Psychotropic. Biol Psychiatry. 2013 Jun 8. doi:pii: S0006-3223(13)00408-3.10.1016/j.biopsych.2013.05.001. [Epub ahead of print] PubMed PMID: 23759244
  3. Julio-Pieper M, O’Connor RM, Dinan TG, Cryan JF. Regulation of the brain-gut axis by group III metabotropic glutamate receptors. Eur J Pharmacol. 2013 Jan 5;698(1-3):19-30. doi: 10.1016/j.ejphar.2012.10.027. Epub 2012 Oct 30. PMID: 23123053 [PubMed - in process].
  4. O’Leary OF, Zandy S, Dinan TG, Cryan JF. Lithium augmentation of the effects of desipramine in a mouse model of treatment-resistant depression: A role for hippocampal cell proliferation. Neuroscience. 2013 Jan 3;228:36-46. doi: 10.1016/j.neuroscience.2012.09.072. Epub 2012 Oct 13. PMID: 23069753 [PubMed - in process].
  5. Cummings E, Donohoe G, Hargreaves A, Moore S, Fahey C, Dinan TG, McDonald C, O’Callaghan E, O’Neill FA, Waddington JL, Murphy KC, Morris DW, Gill M, Corvin A. Mood congruent psychotic symptoms and specific cognitive deficits in carriers of the novel schizophrenia risk variant at MIR-137. Neurosci Lett. 2013 Jan 4;532:33-8. doi: 10.1016/j.neulet.2012.08.065. Epub 2012 Sep 13. PMID: [PubMed - in process].
  6. Browne CA, Clarke G, Hanke J, Dinan TG, Schwegler H, Yilmazer-Hanke DM, Cryan JF. Alterations in prefrontal cortical serotonin and antidepressant-like behavior in a novel C3H/HeJxDBA/2J recombinant inbred mouse strain. Behav Brain Res. 2013 Jan 1;236(1):283-8. doi: 10.1016/j.bbr.2012.08.012. Epub 2012 Aug 29. PMID: 22960457 [PubMed - in process].
  7. Islam S, Cole JL, Walton GM, Dinan TG, Hoffman GR. Psychiatric outcomes in operatively compared with non-operatively managed patients with facial trauma: Is there a difference? J Plast Surg Hand Surg. 2012 Dec;46(6):399-403. doi: 10.3109/2000656X.2012.718715. PMID: 23157500 [PubMed - in process].
  8. Bravo JA, Julio-Pieper M, Forsythe P, Kunze W, Dinan TG, Bienenstock J, Cryan JF. Communication between gastrointestinal bacteria and the nervous system. Curr Opin Pharmacol. 2012 Dec;12(6):667-72. doi: 10.1016/j.coph.2012.09.010. Epub 2012 Oct 4. PMID: 23041079 [PubMed - in process].
  9. Browne CA, O’Brien FE, Connor TJ, Dinan TG, Cryan JF. Differential lipopolysaccharide-induced immune alterations in the hippocampus of two mouse strains: effects of stress. Neuroscience. 2012 Dec 6;225:237-48. doi: 10.1016/j.neuroscience.2012.08.031. Epub 2012 Aug 21. PMID: 22917616 [PubMed - in process].
  10. Saulnier DM, Ringel Y, Heyman MB, Foster JA, Bercik P, Shulman RJ, Versalovic J, Verdu E, Dinan TG, Hecht GA, Guarner F. The intestinal microbiome, probiotics and prebiotics in neurogastroenterology. Gut Microbes. 2012 Nov 30;4(1). [Epub ahead of print] PMID: 23202796 [PubMed - as supplied by publisher].

Dr. Julian Marchesi

Julian Marchesi

  1. Lewis DA, Brown R, Williams J, White P, Jacobson SK, Marchesi JR, Drake MJ. The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults. Front Cell Infect Microbiol. 2013 Aug 15;3:41. doi: 10.3389/fcimb.2013.00041. PMID: 23967406.
  2. Prorok-Hamon M, Friswell MK, Alswied A, Roberts CL, Song F, Flanagan PK, Knight P, Codling C, Marchesi JR, Winstanley C, Hall N, Rhodes JM, Campbell BJ. Colonic mucosa-associated diffusely adherent afaC+ Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer. Gut. 2013 Jul 11. [Epub ahead of print] PubMed PMID: 23846483.
  3. Broaders E, Gahan CG, Marchesi JR. Mobile genetic elements of the human gastrointestinal tract: Potential for spread of antibiotic resistance genes. Gut Microbes. 2013 Apr 12;4(4). [Epub ahead of print] PubMed PMID: 23651955.
  4. Holmes E, Li JV, Marchesi JR, Nicholson JK. Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk. Cell Metab. 2012 Nov 7;16(5):559-64. doi: 10.1016/j.cmet.2012.10.007. PMID: 23140640 [PubMed - in process].
  5. Morris LS, Evans J, Marchesi JR. A robust plate assay for detection of extracellular microbial protease activity in metagenomic screens and pure cultures. J Microbiol Methods. 2012 Oct;91(1):144-6. doi: 10.1016/j.mimet.2012.08.006. Epub 2012 Aug 19. PMID: 22921428 [PubMed - in process].
  6. Culligan EP, Sleator RD, Marchesi JR, Hill C. Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome. ISME J. 2012 Oct;6(10):1916-25. doi: 10.1038/ismej.2012.38. Epub 2012 Apr 26. PMID: 22534607 [PubMed - in process].
  7. Culligan EP, Marchesi JR, Hill C, Sleator RD. Mining the human gut microbiome for novel stress resistance genes. Gut Microbes. 2012 Jul-Aug;3(4):394-7. Epub 2012 Jun 12. PMID: 22688726 [PubMed - in process] Free PMC Article.
  8. Tjalsma H, Boleij A, Marchesi JR, Dutilh BE. A bacterial driver-passenger model for colorectal cancer: beyond the usual suspects. Nat Rev Microbiol. 2012 Jun 25;10(8):575-82. doi: 10.1038/nrmicro2819. PMID: 22728587 [PubMed - indexed for MEDLINE].
  9. Bull MJ, Marchesi JR, Vandamme P, Plummer S, Mahenthiralingam E. Minimum taxonomic criteria for bacterial genome sequence depositions and announcements. J Microbiol Methods. 2012 Feb 16;89(1):18-21. [Epub ahead of print]
  10. Tilg H, Marchesi JR. Too much fat for the gut’s microbiota. Gut. 2012 Apr;61(4):474-5. Epub 2012 Jan 20. No abstract available.

Dr. Douwe van Sinderen

Douwe van Sinderen

  1. Ventura M, Turroni F, Lugli GA, van Sinderen D. Bifidobacteria and humans: our special friends, from ecological to genomics perspectives. J Sci Food Agric. 2013 Aug 20. doi: 10.1002/jsfa.6356. [Epub ahead of print] PMID: 23963950.
  2. Milani C, Hevia A, Foroni E, Duranti S, Turroni F, Lugli GA, Sanchez B, Martín R, Gueimonde M, van Sinderen D, Margolles A, Ventura M. Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol. PLoS One. 2013 Jul 15;8(7):e68739. doi: 10.1371/journal.pone.0068739. Print 2013. PMID: 23869230.
  3. LeBlanc JG, Milani C, de Giori GS, Sesma F, van Sinderen D, Ventura M. Bacteria as vitamin suppliers to their host: a gut microbiota perspective. Curr Opin Biotechnol. 2013 Apr;24(2):160-8. doi: 10.1016/j.copbio.2012.08.005. Epub 2012 Aug 30. Review. PubMed PMID: 22940212.
  4. Turroni F, Ventura M, Buttó LF, Duranti S, O’Toole PW, Motherway MO, van Sinderen D. Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective. Cell Mol Life Sci. 2013 Mar 21. [Epub ahead of print] PubMed PMID: 23516017.
  5. Stockdale SR, Mahony J, Courtin P, Chapot-Chartier MP, van Pijkeren JP, Britton RA, Neve H, Heller KJ, Aideh B, Vogensen FK, van Sinderen D. The lactococcal phages Tuc2009 and TP901-1 incorporate two alternate forms of their tail fibre into their virions for infection specialization. J Biol Chem. 2013 Jan 8. [Epub ahead of print] PMID: 23300085 [PubMed - as supplied by publisher] Free Article.
  6. O’Connell Motherway M, Kinsella M, Fitzgerald GF, van Sinderen D. Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003. Microb Biotechnol. 2013 Jan;6(1):67-79. doi: 10.1111/1751-7915.12011. Epub 2012 Dec 2. PMID: 23199239[PubMed - in process].
  7. Mahony J, Ainsworth S, Stockdale S, van Sinderen D. Phages of lactic acid bacteria: The role of genetics in understanding phage-host interactions and their co-evolutionary processes. Virology. 2012 Dec 20;434(2):143-50. doi: 10.1016/j.virol.2012.10.008. Epub 2012 Oct 22. PMID: 23089252 [PubMed - in process].
  8. Crowley S, Mahony J, van Sinderen D. Comparative analysis of two antifungal Lactobacillus plantarum isolates and their application as bioprotectants in refrigerated foods. J Appl Microbiol. 2012 Dec;113(6):1417-27. doi: 10.1111/jam.12012. Epub 2012 Oct 9. PMID: 22978783 [PubMed - in process].
  9. Watson D, Motherway MO, Schoterman MH, van Neerven RJ, Nauta A, van Sinderen D. Selective carbohydrate utilization by lactobacilli and bifidobacteria. J Appl Microbiol. 2012 Dec 15. doi: 10.1111/jam.12105. [Epub ahead of print] PMID: 23240984 [PubMed - as supplied by publisher].
  10. Ventura M, Turroni F, Motherway MO, MacSharry J, van Sinderen D. Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol. 2012 Oct;20(10):467-76. doi: 10.1016/j.tim.2012.07.002. Epub 2012 Aug 16. PMID: 22902802 [PubMed - in process].

Professor Colin Hill

Colin Hill

  1. Alvarez-Ordóñez A, Begley M, Clifford T, Deasy T, Considine K, Hill C. Structure-Activity Relationship of Synthetic Variants of the Milk-Derived Antimicrobial Peptide αs2-Casein f(183-207). Appl Environ Microbiol. 2013 Sep;79(17):5179-85. doi: 10.1128/AEM.01394-13. Epub 2013 Jun 21. PMID: 23793637.
  2. Hill C, Sanders ME. Rethinking “probiotics” Gut Microbes. 2013 May 29;4(4).[Epub ahead of print] PubMed PMID: 23778363.
  3. Rea MC, Alemayehu D, Ross RP, Hill C. Gut Solutions to a Gut Problem: bacteriocins, probiotics and bacteriophage for control of Clostridium difficile infection. J Med Microbiol. 2013 May 22. [Epub ahead of print] PubMed PMID:23699066.
  4. Cotter PD, Ross RP, Hill C. Bacteriocins – a viable alternative to antibiotics? Nat Rev Microbiol. 2012 Dec 24. doi: 10.1038/nrmicro2937. [Epub ahead of print]PMID:23268227.
  5. Lakshminarayanan B, Guinane CM, O’Connor PM, Coakley M, Hill C, Stanton C, O’Toole PW, Ross RP. Isolation and characterization of bacteriocin-producing bacteria from the intestinal microbiota of elderly Irish subjects. J Appl Microbiol. 2012 Nov 26. doi: 10.1111/jam.12085. [Epub ahead of print] PMID:23181509.
  6. Hill C. Virulence or niche factors: what’s in a name? J Bacteriol. 2012 Nov;194(21):5725-7. doi: 10.1128/JB.00980-12. Epub 2012 Jul 20. Review. PMID: 22821969 [PubMed - indexed for MEDLINE].
  7. Oshima S, Rea MC, Lothe S, Morgan S, Begley M, O’Connor PM, Fitzsimmons A, Kamikado H, Walton R, Ross RP, Hill C. Efficacy of organic acids, bacteriocins, and the lactoperoxidase system in inhibiting the growth of Cronobacter spp. in rehydrated infant formula. J Food Prot. 2012 Oct;75(10):1734-42. doi: 10.4315/0362-028X.JFP-12-066. PMID: 23043820 [PubMed - indexed for MEDLINE].
  8. Clayton EM, Rea MC, Shanahan F, Quigley EM, Kiely B, Ross RP, Hill C. Carriage of Clostridium difficile in outpatients with irritable bowel syndrome. J Med Microbiol. 2012 Sep;61(Pt 9):1290-4. doi: 10.1099/jmm.0.040568-0. Epub 2012 May 11. PMID: 22580916 [PubMed - indexed for MEDLINE].
  9. Dazeley P, Houston-Price C, Hill C. Should healthy eating programmes incorporate interaction with foods in different sensory modalities? A review of the evidence. Br J Nutr. 2012 Sep;108(5):769-77. doi: 10.1017/S0007114511007343. Epub 2012 Jan 23. Review. PMID: 22264626 [PubMed - indexed for MEDLINE].
  10. Mills S, Shanahan F, Stanton C, Hill C, Coffey A, Ross RP. Movers and shakers: Influence of bacteriophages in shaping the mammalian gut microbiota. Gut Microbes. 2012 Sep 28;4(1). [Epub ahead of print]PMID:23022738.

Dr. Tony Fitzgerald

Tony Fitzgerald

  1. Harrington JM, Fitzgerald AP, Kearney PM, McCarthy VJ, Madden J, Browne G, Dolan E, Perry IJ. DASH Diet Score and Distribution of Blood Pressure in Middle-Aged Men and Women. Am J Hypertens. 2013 Aug 6. [Epub ahead of print] PMID: 23920282.
  2. O’Sullivan O, Coakley M, Lakshminarayanan B, Conde S, Claesson MJ, Cusack S, Fitzgerald AP, O’Toole PW, Stanton C, Ross RP; on behalf of the ELDERMET Consortium. Alterations in intestinal microbiota of elderly Irish subjects post-antibiotic therapy. J Antimicrob Chemother. 2013 Jan;68(1):214-221. Epub 2012 Sep 4. PMID: 22949626 [PubMed - as supplied by publisher].
  3. Browne GM, Eustace JA, Fitzgerald AP, Lutomski JE, Perry IJ. Prevalence of diminished kidney function in a representative sample of middle and older age adults in the Irish population. BMC Nephrol. 2012 Nov 2;13:144. doi: 10.1186/1471-2369-13-144. PMID: 23121733 [PubMed - in process] Free PMC Article.
  4. Kearney PM, Harrington JM, Mc Carthy VJ, Fitzgerald AP, Perry IJ. Cohort Profile: The Cork and Kerry Diabetes and Heart Disease Study. Int J Epidemiol. 2012 Sep 14. [Epub ahead of print] No abstract available. PMID: 22984148 [PubMed - as supplied by publisher].
  5. Cashman KD, Muldowney S, McNulty B, Nugent A, Fitzgerald AP, Kiely M, Walton J, Gibney MJ, Flynn A. Vitamin D status of Irish adults: findings from the National Adult Nutrition Survey. Br J Nutr. 2012 Aug 10:1-9. [Epub ahead of print] PMID: 22883239 [PubMed - as supplied by publisher].
  6. Duggan EM, Sturley J, Fitzgerald AP, Perry IJ, Hourihane JO. The 2002-2007 trends of prevalence of asthma, allergic rhinitis and eczema in Irish schoolchildren. Pediatr Allergy Immunol. 2012 Aug;23(5):464-71. doi: 10.1111/j.1399-3038.2012.01291.x. Epub 2012 Mar 22. PMID: 22435792 [PubMed - indexed for MEDLINE].
  7. Perry IJ, Corcoran P, Fitzgerald AP, Keeley HS, Reulbach U, Arensman E. The Incidence and Repetition of Hospital-Treated Deliberate Self Harm: Findings from the World’s First National Registry. PLoS One. 2012;7(2):e31663. Epub 2012 Feb 20.
  8. Cashman KD, Fitzgerald AP, Kiely M, Seamans KM. A systematic review and meta-regression analysis of the vitamin D intake-serum 25-hydroxyvitamin D relationship to inform European recommendations. Br J Nutr. 2011 Dec;106(11):1638-48. Epub 2011 Oct 14.
  9. Harrington J, Fitzgerald AP, Layte R, Lutomski J, Molcho M, Perry IJ. Sociodemographic, health and lifestyle predictors of poor diets. Public Health Nutr. 2011 Jun 13:1-10. [Epub ahead of print]
  10. Kulcsár ZM, Lövquist E, Fitzgerald AP, Aboulafia A, Shorten GD. Testing haptic sensations for spinal anesthesia. Reg Anesth Pain Med. 2011 Jan-Feb;36(1):12-6.


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